All of the tutorials show some common code in the constructor that creates an instance of JGraph and places it into a frame. The code is:
_jgraph = new JGraph();
_graphPane = _jgraph.getGraphPane();
TutorialWindow window = new TutorialWindow("Simple graph tutorial");
window.getContentPane().add("Center",_jgraph);
window.setSize(600,400);
window.setVisible(true);
(Where _jgraph and _graphPane are private variables of the class.) Every JGraph contains a top-level canvas pane, which in turn contains layers. By default, the top-level pane is an instance of GraphPane.